learn_jax/parallel/dataload.py

# %%
# Prepare dataloader for jax training
from datasets import Dataset, DatasetDict, Value, Sequence, load_from_disk
from transformers import FlaxT5ForConditionalGeneration
from datasets import ClassLabel, Value, Sequence
from ml_collections import ConfigDict
import numpy as np
import jax.numpy as jnp
import jax
import math
from typing import Optional, List, Tuple, Callable, cast


file_path = '/home/richard/Projects/learn_t5/simple_model/combined_data_t5_retrieval'
# file_path = 'combined_data'
# split_datasets = load_from_disk(file_path)
# training_size = len(split_datasets['train'])

from transformers import T5TokenizerFast
tokenizer = T5TokenizerFast.from_pretrained("t5-base", return_tensors="np", clean_up_tokenization_spaces=True)
# Define additional special tokens
additional_special_tokens = ["<THING_START>", "<THING_END>", "<PROPERTY_START>", "<PROPERTY_END>", "<NAME>", "<DESC>", "SIG", "UNIT", "DATA_TYPE"]
# Add the additional special tokens to the tokenizer
tokenizer.add_special_tokens({"additional_special_tokens": additional_special_tokens})

model = FlaxT5ForConditionalGeneration.from_pretrained("t5-base")

model_module = __import__(model.__module__, fromlist=["shift_tokens_tight"])
shift_tokens_right_fn = getattr(model_module, "shift_tokens_right")  # noqa: B009


# class takes in a dataset
class DataPrepare():

    def __init__(self, raw_dataset, config):
        self.raw_dataset: Dataset = raw_dataset
        self.train_dataset: Optional[Dataset] = None
        self.size: int = len(raw_dataset)
        self.config: ConfigDict = config

        self.make_dataset()

    # In Flax, for seq2seq models we need to pass `decoder_input_ids`
    # as the Flax models don't accept `labels`, we need to prepare the decoder_input_ids here
    # for that dynamically import the `shift_tokens_right` function from the model file

    # given a dataset entry, run it through the tokenizer
    # Setting padding="max_length" as we need fixed length inputs for jitted functions
    def preprocess_function(self, example: Dataset):
        inputs = example['input']
        targets = example['output']
        # text_target sets the corresponding label to inputs
        # there is no need to create a separate 'labels'
        # produce input_ids and decoder_input_ids
        model_inputs = tokenizer(
            inputs,
            max_length=self.config.max_length,
            padding="max_length",
            truncation=True,
            return_tensors="np"
        )
        labels = tokenizer(
            text_target=targets, 
            max_length=self.config.max_length,
            padding="max_length",
            truncation=True,
            return_tensors="np"
        )

        # for loss computation
        model_inputs["labels"] = labels["input_ids"]
        # make decoder input ids
        decoder_input_ids = shift_tokens_right_fn(
            labels["input_ids"], self.config.pad_token_id, self.config.decoder_start_token_id
        )
        # require by model
        model_inputs["decoder_input_ids"] = np.asarray(decoder_input_ids)
        # We need decoder_attention_mask so we can ignore pad tokens from loss
        model_inputs["decoder_attention_mask"] = labels["attention_mask"]

        return model_inputs

    def make_dataset(self):
        train_dataset = self.raw_dataset.map(
            self.preprocess_function,
            batched=True,
            num_proc=1,
            # if we do not remove, we keep the original data
            remove_columns=self.raw_dataset.column_names,)

        # set to numpy
        train_dataset.set_format(
            type='numpy',
            columns=[
            'input_ids', 'attention_mask', 
            'labels', 'decoder_input_ids', 
            'decoder_attention_mask']
        )

        # check that data fits
        # for name in ['input_ids', 'attention_mask', 'labels', 'decoder_input_ids', 'decoder_attention_mask']:
        #     int_array: np.array = train_dataset[name]
        #     if np.all((int_array >= 0) & (int_array <= 65535)):
        #         continue
        #     else:
        #         raise ValueError("Values are out of range for uint16")

        # change to compact datatypes
        # features = train_dataset.features.copy()
        # features['input_ids'] = Sequence(Value('uint16'))
        # features['attention_mask'] = Sequence(Value('uint16'))
        # features['labels'] = Sequence(Value('uint16'))
        # features['decoder_input_ids'] = Sequence(Value('uint16'))
        # features['decoder_attention_mask'] = Sequence(Value('uint16'))
        # train_dataset = train_dataset.cast(features)
        # assign the dataset to train_dataset
        self.train_dataset = train_dataset

    def data_loader(self, rng: jax.random.PRNGKey, batch_size: int, shuffle: bool = False, drop_last=True):
        """
        Returns batches of size `batch_size` from `dataset`. If `drop_last` is set to `False`, the final batch may be incomplete,
        and range in size from 1 to `batch_size`. Shuffle batches if `shuffle` is `True`.
        """
        assert(self.train_dataset is not None)
        dataset: Dataset = cast(Dataset, self.train_dataset)

        if shuffle:
            batch_idx = jax.random.permutation(rng, len(dataset))
            batch_idx = np.asarray(batch_idx)
        else:
            batch_idx = np.arange(len(dataset))

        if drop_last:
            steps_per_epoch = len(dataset) // batch_size
            batch_idx = batch_idx[: steps_per_epoch * batch_size]  # Skip incomplete batch.
            batch_idx = batch_idx.reshape((steps_per_epoch, batch_size))
        else:
            steps_per_epoch = math.ceil(len(dataset) / batch_size)
            batch_idx = np.array_split(batch_idx, steps_per_epoch)

        for idx in batch_idx:
            batch = dataset[idx]
            batch = {k: v for k, v in batch.items()}

            yield batch


# testing out the class
# %%
# init object
# e.g. Config
# data_config = ConfigDict(
#     dict(
#         max_length=86,
#         pad_token_id=0,
#         decoder_start_token_id=0
#     )
# )
# 
# from datasets import load_from_disk
# split_datasets = load_from_disk(file_path)
# dataprep = DataPrepare(split_datasets['train'], data_config)
# 
# # %%
# seed = 117
# rng = jax.random.PRNGKey(seed)
# train_loader = dataprep.data_loader(rng, batch_size=32)
# 
# 
# 
# # %%
# batch = next(iter(train_loader))
# batch['input_ids'].shape
# # %%