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2 Commits

Author SHA1 Message Date
Richard Wong 39b3570e11
Feat: changed benchmark procedure to use parallel
Feat: include time and filename in ogdf_mps
2024-05-08 16:03:40 +09:00
Richard Wong 7b875ba141
Feat: added graph generation for barabasi-albert and regular 2024-05-07 11:38:31 +09:00
29 changed files with 10283 additions and 207 deletions

5
benchmark_results/.gitignore vendored Normal file
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output/north
output/random_regular
output/rome
output/scale_free
output/steinlib

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#!/bin/bash
FILE_LIST=$1
PROGRAM=$2
ARGS=$3
THREADS=11
cat $FILE_LIST | parallel -k --jobs $THREADS "./$PROGRAM {} $ARGS"

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../../deferred_planarity_test/bin/dpt_planarizer

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../make_planar/bin/get_graph_characteristics

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/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp3-92.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp3-94.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp3-95.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp3-96.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp3-98.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp3-99.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-11.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-13.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-14.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-15.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-16.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-17.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-18.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-19.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-21.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-22.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-23.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-24.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-25.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-26.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-27.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-28.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-29.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-30.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-31.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-32.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-33.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-34.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-35.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-36.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-37.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-38.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-39.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-40.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-41.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-42.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-43.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-44.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-45.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-46.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-47.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-48.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-49.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-50.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-51.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-52.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-53.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-54.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-55.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-56.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-58.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-59.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-60.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-61.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-62.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-63.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-64.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-66.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-67.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-68.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-69.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-70.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-71.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-72.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-73.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-74.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-75.gml
/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/steinlib/gml_non_planar/wrp4-76.gml

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@ -1,7 +0,0 @@
dpt_planarizer
north.txt
north_result.csv
north_subset.txt
ogdf_mps_fast
output_north_dfs.txt
output_north_fast.txt

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@ -1,33 +0,0 @@
#!/bin/bash
FILE_LIST=$1
PROGRAM=$2
# Check if file_list.txt exists
if [ ! -f $FILE_LIST ]; then
echo "input file not found!"
exit 1
fi
INPUT_PATH=/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/north/gml_non_planar/
# Read file paths from file_list.txt
while IFS= read -r INPUT_FILE; do
# Extract filename stem
filename=$(basename -- "$INPUT_FILE")
filename_stem="${filename%.*}"
# Run your program and capture its output
if [ "$PROGRAM" == "ogdf_mps_fast" ]; then
# do something if strings are equal
./$PROGRAM "$INPUT_PATH$INPUT_FILE"
elif [ "$PROGRAM" == "dpt_planarizer" ]; then
# do something if strings are not equal
./$PROGRAM "$INPUT_PATH$INPUT_FILE" 1000
fi
done < $FILE_LIST

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@ -0,0 +1 @@
../make_planar/bin/ogdf_mps_cactus

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@ -0,0 +1 @@
../make_planar/bin/ogdf_mps_fast

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@ -1,6 +0,0 @@
dpt_planarizer
ogdf_mps_fast
output_rome_dfs.txt
output_rome_fast.txt
rome.txt
rome_result.csv

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@ -1,33 +0,0 @@
#!/bin/bash
FILE_LIST=$1
PROGRAM=$2
# Check if file_list.txt exists
if [ ! -f $FILE_LIST ]; then
echo "input file not found!"
exit 1
fi
INPUT_PATH=/home/richard/Projects/06_research/maximum_planar_subgraph/benchmark_data/graph_datasets/rome/gml_non_planar/
# Read file paths from file_list.txt
while IFS= read -r INPUT_FILE; do
# Extract filename stem
filename=$(basename -- "$INPUT_FILE")
filename_stem="${filename%.*}"
# Run your program and capture its output
if [ "$PROGRAM" == "ogdf_mps_fast" ]; then
# do something if strings are equal
./$PROGRAM "$INPUT_PATH$INPUT_FILE"
elif [ "$PROGRAM" == "dpt_planarizer" ]; then
# do something if strings are not equal
./$PROGRAM "$INPUT_PATH$INPUT_FILE" 1000
fi
done < $FILE_LIST

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@ -0,0 +1,33 @@
#!/bin/bash
NUM_CYCLES=1000
TYPE=$1
start_time=$(date +%s.%N)
echo "running $TYPE: dfs"
bash benchmark.bash input/$TYPE.txt dpt_planarizer $NUM_CYCLES > output/$TYPE/dfs.csv
end_time=$(date +%s.%N)
elapsed_time=$(echo "$end_time - $start_time" | bc)
echo "Elapsed time: $elapsed_time seconds"
echo ""
echo "running $TYPE: cactus"
start_time=$(date +%s.%N)
bash benchmark.bash input/$TYPE.txt ogdf_mps_cactus > output/$TYPE/cactus.csv
end_time=$(date +%s.%N)
elapsed_time=$(echo "$end_time - $start_time" | bc)
echo "Elapsed time: $elapsed_time seconds"
echo ""
echo "running $TYPE: fast"
start_time=$(date +%s.%N)
bash benchmark.bash input/$TYPE.txt ogdf_mps_fast > output/$TYPE/fast.csv
end_time=$(date +%s.%N)
elapsed_time=$(echo "$end_time - $start_time" | bc)
echo "Elapsed time: $elapsed_time seconds"
echo ""
echo "getting propreties..."
bash benchmark.bash input/$TYPE.txt get_graph_characteristics > output/$TYPE/graph_properties.csv
echo "done"

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@ -1,9 +0,0 @@
benchmark_steinlib.bash
dpt_planarizer
dpt_planarizer_random
dpt_planarizer_wilson
get_graph_char
ogdf_mps_cactus
ogdf_mps_fast
output_steinlib_*
steinlib.txt

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@ -0,0 +1,27 @@
#include <ogdf/basic/basic.h>
#include <ogdf/basic/Graph.h>
#include <ogdf/fileformats/GraphIO.h>
#include <ogdf/basic/graph_generators.h>
using namespace ogdf;
int main(int argc, char **argv) {
int nodeCount = std::stoi(argv[1]);
int edgeCount = std::stoi(argv[2]);
int copies = std::stoi(argv[3]);
int seed = std::stoi(argv[4]);
std::string outputFolder = argv[5];
setSeed(seed);
for (int i = 0; i < copies; i++) {
Graph G;
randomRegularGraph(G, nodeCount, edgeCount);
std::stringstream ss;
ss << outputFolder << "/graphn" << nodeCount << "e" << edgeCount << "s"
<< seed << "i" << i << ".gml";
std::string s = ss.str();
GraphIO::write(G, s, GraphIO::writeGML);
}
}

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@ -0,0 +1,27 @@
#include <ogdf/basic/basic.h>
#include <ogdf/basic/Graph.h>
#include <ogdf/fileformats/GraphIO.h>
#include <ogdf/basic/graph_generators.h>
using namespace ogdf;
int main(int argc, char **argv) {
int nodeCount = std::stoi(argv[1]);
int edgeCount = std::stoi(argv[2]);
int copies = std::stoi(argv[3]);
int seed = std::stoi(argv[4]);
std::string outputFolder = argv[5];
setSeed(seed);
for (int i = 0; i < copies; i++) {
Graph G;
preferentialAttachmentGraph(G, nodeCount, edgeCount);
std::stringstream ss;
ss << outputFolder << "/graphn" << nodeCount << "e" << edgeCount << "s"
<< seed << "i" << i << ".gml";
std::string s = ss.str();
GraphIO::write(G, s, GraphIO::writeGML);
}
}

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@ -0,0 +1,18 @@
#!/bin/bash
g++ ogdf_mps_cactus.cpp -lOGDF -lCOIN -o bin/ogdf_mps_cactus -O3 -march=native -Wall
echo "built ogdf_mps_cactus"
g++ ogdf_mps_fast.cpp -lOGDF -lCOIN -o bin/ogdf_mps_fast -O3 -march=native -Wall
echo "built ogdf_mps_fast"
g++ ogdf_mps_exact.cpp -lOGDF -lCOIN -o bin/ogdf_mps_exact -O3 -march=native -Wall
echo "built ogdf_mps_exact"
g++ get_graph_characteristics.cpp -lOGDF -lCOIN -o bin/get_graph_characteristics -O3 -march=native -Wall
echo "built get_graph_characteristics"

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@ -1,8 +1,8 @@
/* This code converts GraphML to gml
/* get number of nodes and edge of graph
*
*/
#include <ogdf/fileformats/GraphIO.h>
#include <filesystem>
#include <iostream>
using namespace ogdf;
@ -18,8 +18,8 @@ int main(int argc, char* argv[])
std::cerr << "Could not read input.gml" << std::endl;
return 1;
}
std::cout << G.numberOfNodes() << ", " << G.numberOfEdges() << std::endl;
string filename = std::filesystem::path(input_file).stem();
std::cout << filename << ", " << G.numberOfNodes() << ", " << G.numberOfEdges() << std::endl;
return 0;

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@ -1,11 +1,13 @@
#include <ogdf/basic/STNumbering.h>
#include <ogdf/fileformats/GraphIO.h>
/* Maximum Planar Subgraph by cactus
*
*/
// #include <ogdf/planarity/PlanarSubgraphBoyerMyrvold.h>
#include <ogdf/fileformats/GraphIO.h>
#include <ogdf/planarity/MaximumPlanarSubgraph.h>
#include <ogdf/planarity/PlanarSubgraphCactus.h>
#include <ogdf/planarity/MaximalPlanarSubgraphSimple.h>
#include <filesystem>
#include <chrono>
#include <iostream>
using namespace ogdf;
@ -14,54 +16,38 @@ using namespace ogdf;
int main(int argc, char* argv[])
{
string inputFile = argv[1];
string input_file = argv[1];
Graph G;
if (!GraphIO::read(G, inputFile, GraphIO::readGML)) {
if (!GraphIO::read(G, input_file, GraphIO::readGML)) {
std::cerr << "Could not read input.gml" << std::endl;
return 1;
}
// --------------------------------
// planarize
// --------------------------------
NodeArray<int> numbering(G);
computeSTNumbering(G, numbering, nullptr, nullptr, true);
OGDF_ASSERT(num == G.numberOfNodes());
// print after input
// graphPrinter(G);
// std::cout << "G Planarity: " << ogdf::isPlanar(G) << std::endl;
// std::cout << "Original number of nodes: " << G.numberOfNodes() << std::endl;
// std::cout << "Original number of edges: " << G.numberOfEdges() << std::endl;
// separator for planarization
// <-------------->
// std::cout << "start planarization" << std::endl;
List<edge> *delEdges = new List<edge>; // empty list
auto start = std::chrono::high_resolution_clock::now();
// compute a cactus, then compute edge addition
PlanarSubgraphCactus<int> psc;
ogdf::MaximalPlanarSubgraphSimple<int> mps(psc);
mps.call(G, *delEdges);
auto end = std::chrono::high_resolution_clock::now();
auto microseconds = std::chrono::duration_cast<std::chrono::microseconds>(end - start).count();
double time = static_cast<double>(microseconds) / 1'000'000.0;
std::cout << delEdges->size() << std::endl;
// --------------------------------
// print out result of planarization
// --------------------------------
// delete removed edges
//for (edge e: *delEdges) {
// // print removed edges
// // std::cout << e->adjSource() << std::endl;
// G.delEdge(e);
//}
// write processed graph to new gml file
// GraphIO::write(G, "output.gml", GraphIO::writeGML);
// std::cout << ogdf::isPlanar(G) << std::endl;
// std::cout << "Original number of nodes: " << G.numberOfNodes() << std::endl;
// std::cout << "Subgraph number of edges: " << G.numberOfEdges() << std::endl;
int removed_edges = delEdges->size();
string filename = std::filesystem::path(input_file).stem();
std::cout << filename << ", " << removed_edges << ", " << time << std::endl;
return 0;

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@ -1,17 +1,12 @@
#include <ogdf/basic/STNumbering.h>
/* Maximum Planar Subgraph by Integer Linear Program (ILP)
*
*/
#include <ogdf/fileformats/GraphIO.h>
// #include <ogdf/basic/extended_graph_alg.h>
#include <ogdf/planarity/PlanarSubgraphFast.h>
#include <ogdf/planarity/PlanarSubgraphBoyerMyrvold.h>
#include <ogdf/planarity/PlanarSubgraphPC.h>
#include <ogdf/planarity/MaximumPlanarSubgraph.h>
#include <ogdf/planarity/MaximalPlanarSubgraphSimple.h>
#include <filesystem>
#include <iostream>
#include <map>
#include <chrono>
#include <getopt.h>
using namespace ogdf;
@ -19,52 +14,40 @@ using namespace ogdf;
int main(int argc, char* argv[])
{
string inputFile = argv[1];
string input_file = argv[1];
Graph G;
if (!GraphIO::read(G, inputFile, GraphIO::readGML)) {
if (!GraphIO::read(G, input_file, GraphIO::readGML)) {
std::cerr << "Could not read input.gml" << std::endl;
return 1;
}
// --------------------------------
// planarize
// --------------------------------
// print after input
// graphPrinter(G);
std::cout << "G Planarity: " << ogdf::isPlanar(G) << std::endl;
std::cout << "Original number of nodes: " << G.numberOfNodes() << std::endl;
std::cout << "Original number of edges: " << G.numberOfEdges() << std::endl;
// store the deleted edges to be used to delete edges from G
List<edge> *delEdges = new List<edge>;
// separator for planarization
// <-------------->
// PQ implementation to make planar subgraph
std::cout << "start planarization" << std::endl;
List<edge> *delEdges = new List<edge>; // empty list
auto start = std::chrono::high_resolution_clock::now();
std::cout << "running maximum" << std::endl;
// perform planarization by ILP
ogdf::MaximumPlanarSubgraph<int> mps;
mps.call(G, *delEdges);
std::cout << "Edges removed:" << delEdges->size() << std::endl;
auto end = std::chrono::high_resolution_clock::now();
auto microseconds = std::chrono::duration_cast<std::chrono::microseconds>(end - start).count();
double time = static_cast<double>(microseconds) / 1'000'000.0;
// delete removed edges
for (edge e: *delEdges) {
// print removed edges
// std::cout << e->adjSource() << std::endl;
G.delEdge(e);
}
// write processed graph to new gml file
// GraphIO::write(G, "output.gml", GraphIO::writeGML);
std::cout << "G planarity: " << ogdf::isPlanar(G) << std::endl;
std::cout << "Original number of nodes: " << G.numberOfNodes() << std::endl;
std::cout << "Subgraph number of edges: " << G.numberOfEdges() << std::endl;
// --------------------------------
// print out result of planarization
// --------------------------------
int removed_edges = delEdges->size();
string filename = std::filesystem::path(input_file).stem();
std::cout << filename << ", " << removed_edges << ", " << time << std::endl;
return 0;
}

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@ -1,14 +1,14 @@
/*
/* Maximum Planar Subgraph by PQ tree-based planarity test
*
*/
#include <ogdf/basic/STNumbering.h>
#include <ogdf/fileformats/GraphIO.h>
#include <ogdf/planarity/PlanarSubgraphFast.h>
// #include <ogdf/planarity/PlanarSubgraphBoyerMyrvold.h>
#include <ogdf/planarity/MaximumPlanarSubgraph.h>
#include <ogdf/planarity/MaximalPlanarSubgraphSimple.h>
#include <filesystem>
#include <chrono>
#include <iostream>
using namespace ogdf;
@ -17,10 +17,10 @@ using namespace ogdf;
int main(int argc, char* argv[])
{
string inputFile = argv[1];
string input_file = argv[1];
Graph G;
if (!GraphIO::read(G, inputFile, GraphIO::readGML)) {
if (!GraphIO::read(G, input_file, GraphIO::readGML)) {
std::cerr << "Could not read input.gml" << std::endl;
return 1;
}
@ -30,44 +30,29 @@ int main(int argc, char* argv[])
computeSTNumbering(G, numbering, nullptr, nullptr, true);
OGDF_ASSERT(num == G.numberOfNodes());
// print after input
// graphPrinter(G);
// std::cout << "G Planarity: " << ogdf::isPlanar(G) << std::endl;
// std::cout << "Original number of nodes: " << G.numberOfNodes() << std::endl;
// std::cout << "Original number of edges: " << G.numberOfEdges() << std::endl;
// --------------------------------
// planarize
// --------------------------------
// separator for planarization
// <-------------->
// PQ implementation to make planar subgraph
List<edge> *delEdges = new List<edge>; // empty list
auto start = std::chrono::high_resolution_clock::now();
PlanarSubgraphFast<int> psf;
// comment out to use default options
// psf.runs(1);
ogdf::MaximalPlanarSubgraphSimple<int> mps(psf);
mps.call(G, *delEdges);
auto end = std::chrono::high_resolution_clock::now();
auto microseconds = std::chrono::duration_cast<std::chrono::microseconds>(end - start).count();
double time = static_cast<double>(microseconds) / 1'000'000.0;
// print edges removed
std::cout << delEdges->size() << std::endl;
// --------------------------------
// print out result of planarization
// --------------------------------
// delete removed edges
// for (edge e: *delEdges) {
// // print removed edges
// // std::cout << e->adjSource() << std::endl;
// G.delEdge(e);
// }
// write processed graph to new gml file
// GraphIO::write(G, "output.gml", GraphIO::writeGML);
// std::cout << "G planarity: " << ogdf::isPlanar(G) << std::endl;
// std::cout << "Original number of nodes: " << G.numberOfNodes() << std::endl;
// std::cout << "Subgraph number of edges: " << G.numberOfEdges() << std::endl;
int removed_edges = delEdges->size();
string filename = std::filesystem::path(input_file).stem();
std::cout << filename << ", " << removed_edges << ", " << time << std::endl;
return 0;

2
synthetic_data/barabasi/.gitignore vendored Normal file
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@ -0,0 +1,2 @@
100*
make_scale_free_graph

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@ -0,0 +1,30 @@
#!/bin/bash
# Define the parameters
num_node_range=(100 1000 10000)
edge_multiplier_range=(2 3 5 10 20)
copies=20
seed=41
max_jobs=2
running_jobs=0
# Loop through different parameters
for num_node in "${num_node_range[@]}"; do
for edge_multiplier in "${edge_multiplier_range[@]}"; do
num_edge=$((num_node * edge_multiplier))
output_folder="${num_node}n${num_edge}e"
mkdir -p $output_folder
# Run the program with the parameters
echo "run with $num_node nodes and $num_edge edges output to $output_folder"
./make_scale_free_graph $num_node $num_edge $copies $seed $output_folder &
((running_jobs++))
if ((running_jobs >= max_jobs)); then
wait
running_jobs=0
fi
done
done

2
synthetic_data/regular/.gitignore vendored Normal file
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@ -0,0 +1,2 @@
100*
make_regular_graph

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@ -0,0 +1,30 @@
#!/bin/bash
# Define the parameters
num_node_range=(100 1000 10000)
edge_multiplier_range=(2 3 5 10 20)
copies=20
seed=41
max_jobs=2
running_jobs=0
# Loop through different parameters
for num_node in "${num_node_range[@]}"; do
for edge_multiplier in "${edge_multiplier_range[@]}"; do
num_edge=$((num_node * edge_multiplier))
output_folder="${num_node}n${num_edge}e"
mkdir -p $output_folder
# Run the program with the parameters
echo "run with $num_node nodes and $num_edge edges output to $output_folder"
./make_regular_graph $num_node $num_edge $copies $seed $output_folder &
((running_jobs++))
if ((running_jobs >= max_jobs)); then
wait
running_jobs=0
fi
done
done